منابع مشابه
The SYSTERS protein sequence cluster set
The SYSTERS (short for SYSTEmatic Re-Searching) protein sequence cluster set consists of the classification of all sequences from SWISS-PROT and PIR into disjoint protein family clusters and hierarchically into superfamily and subfamily clusters. The cluster set can be searched with a sequence using the SSMAL search tool or a traditional database search tool like BLAST or FASTA. Additionally a ...
متن کاملWWW access to the SYSTERS protein sequence cluster set
SUMMARY We present a Web server where the SYSTERS cluster set of the non-redundant protein database consisting of sequences from SWISS-PROT and PIR is being made available for querying and browsing. The cluster set can be searched with a new sequence using the SSMAL search tool. Additionally, a multiple alignment is generated for each cluster and annotated with domain information from the Pfam ...
متن کاملSYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein
We have integrated the protein families from SYSTERS and the expressed sequence tag (EST) clusters from our database GeneNest with SpliceNest, a new database mapping EST contigs into genomic DNA. The SYSTERS protein sequence cluster set provides an automatically generated classification of all sequences of the SWISS-PROT, TrEMBL and PIR databases into disjoint protein family and superfamily clu...
متن کاملThe SYSTERS Protein Family Database in 2005
The SYSTERS project aims to provide a meaningful partitioning of the whole protein sequence space by a fully automatic procedure. A refined two-step algorithm assigns each protein to a family and a superfamily. The sequence data underlying SYSTERS release 4 now comprise several protein sequence databases derived from completely sequenced genomes (ENSEMBL, TAIR, SGD and GeneDB), in addition to t...
متن کاملSysters: Contradictions in Community
Systers is a 13-year old online community for technical women. Substantial growth in the membership (from an initial group of 12 to over 2300 today), and of the Internet generally, has changed the nature of this community. We report empirical research leading to redesign of Systers’ online community resources. Systers must serve an increasingly diverse membership. Newcomers desire more and broa...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2000
ISSN: 1362-4962
DOI: 10.1093/nar/28.1.270